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Biotech / Medical : VGNX -- Variagenics, Inc. -- Ignore unavailable to you. Want to Upgrade?


To: scaram(o)uche who wrote (25)7/12/2001 4:40:43 PM
From: nigel bates  Respond to of 269
 
The associated PR (any reports on the cc. would be gratefully received) -

NEW HAVEN, Conn., July 12 /PRNewswire/ -- Genaissance Pharmaceuticals, Inc. (Nasdaq: GNSC - news), today announced that it has published in the international journal, ``Science''(1) the most detailed examination of human genes ever conducted. The research demonstrates that there is no one single form of any given gene.
``These results will cause the scientific and medical communities to rethink the definition of the human genome,'' said Gualberto Ruano, M.D., Ph.D., CEO of Genaissance. ``We found that there are on average 14 versions of each gene that can be inherited by a human being. This finding is a breakthrough that makes feasible the development of personalized medicine. By being able to define gene versions, we can now determine those versions that predict drug response and, hence, change the current drug paradigm that one drug fits all individuals.''
In this study of 313 genes in 82 unrelated individuals, Genaissance researchers found a massive amount of previously undiscovered gene variability. Significantly, Genaissance researchers were able to identify the relationship between DNA variation and the different versions of a gene, defined by its haplotype, that exist in the human population. Haplotypes -- akin to genomic bar codes -- represent the pattern and organization of DNA variability that each individual inherits.
``This is the most extensive study of gene variation in diverse populations,'' said J. Claiborne Stephens, Ph.D., Executive Director of Population Genomics at Genaissance, and the paper's lead author. ``In essence, we have defined a technology for discovering the gene versions that exist in humans.''
Haplotypes -- A Catalog of the Versions of Genes
Genaissance has pioneered the industrialization of haplotype discovery over the past four years. Recently, major government and academic genome researchers have agreed that haplotypes are a powerful tool to reduce the complexity of genetic information to a practical form from which inferences about human health can be made using small sample sizes.
Genaissance has already discovered over 60,000 gene versions (haplotypes) from nearly 4,000 genes. If there are only 30,000 human genes, then the human genome can now be viewed to consist of about 500,000 gene versions. Genaissance intends to discover the gene versions for all human genes.
``Our work is being conducted on a scale never before achieved,'' said Gerald F. Vovis, Ph.D., Chief Technology Officer and Senior Vice President. ``Genaissance was the first to pioneer the approach of using haplotypes as predictors of drug response and, with our proprietary HAP(TM) Technology, has the potential to eliminate trial and error medicine.''
Clinical Studies Creating Personalized Medicines
Genaissance believes that the safety and side effect profile of a drug in any particular individual depends largely on the versions of genes that each person has inherited. Genaissance has already demonstrated that a response to a drug can be predicted from an individual's own DNA using its proprietary HAP(TM) Technology. The findings were published last September in the ``Proceedings of the National Academy of Sciences''(2). Clear correlations were observed between specific haplotypes and clinical response to albuterol, a drug commonly used to achieve rapid improvement in respiratory function.
Building upon the success of the asthma study, Genaissance launched the largest prospective clinical trial ever conducted to discover how physicians can personalize prescriptions using information about human gene variation. The STRENGTH (Statin Response Examined by Genetic HAP(TM) Markers) Study started in April 2001 and patient enrollment into the study is nearly completed. Genaissance plans to initiate other studies over the next year with leading drugs in major therapeutic categories, including asthma and schizophrenia.
``Genaissance is the only company conducting clinical trials using newly discovered versions of genes that are predictive of drug response and side effects,'' said Kenneth Kashkin, M.D., Chief Medical Officer and Executive Vice President.
Dr. Ruano concluded, ``Genaissance's clinical studies will help to produce new medicines with demonstrable safety and efficacy advantages over currently available products. This creates an enormous business opportunity for us as we work to improve the health of patients.''



To: scaram(o)uche who wrote (25)7/19/2001 1:35:59 AM
From: scaram(o)uche  Read Replies (1) | Respond to of 269
 
Atherosclerosis 2001 Jun;156(2):409-15

The 1298A-->C polymorphism in methylenetetrahydrofolate reductase
(MTHFR): in vitro expression and association with homocysteine.

Weisberg IS, Jacques PF, Selhub J, Bostom AG, Chen Z, Curtis Ellison R, Eckfeldt JH,
Rozen R.

Departments of Human Genetics and Pediatrics, McGill University Health Centre, Montreal,
Canada

A common mutation in methylenetetrahydrofolate reductase (MTHFR), 677C-->T, is associated
with reduced enzyme activity, a thermolabile enzyme and mild hyperhomocysteinemia, a risk
factor for vascular disease. Recently, a second common mutation (1298A-->C; glutamate to
alanine) was reported, but this mutation was suggested to increase homocysteine only in
individuals who carried the bp677 variant. To evaluate the functional consequences of this
mutation, we performed site-directed mutagenesis and in vitro expression. For in vivo assessment
of clinical impact, we examined the 1298A-->C genotypes and plasma homocysteine in 198
individuals from the NHLBI Family Heart Study that had previously been assessed for the 677
substitution. Site-directed mutagenesis of the human cDNA was performed to generate enzymes
containing each of the two mutations, as well as an enzyme containing both substitutions. Enzyme
activity and thermolability were assessed in bacterial extracts. The activity of the wild-type cDNA
was designated as 100%; mutant enzymes containing the 1298 and 677 mutations separately had
68% (+/-5.0) and 45% (+/-10.8), respectively, of control activity while the enzyme containing
both mutations had 41% (+/-12.8) of control activity. The 1298 mutation was not associated
with a thermolabile enzyme. In the Family Heart Study, fasting homocysteine was significantly
higher (P<0.05) in individuals heterozygous for both substitutions, compared to individuals who
carried only the 677C-->T variant. This study suggests that two variants in MTHFR should be
assessed as genetic risk factors for hyperhomocysteinemia.

Hum Mol Genet 2001 Mar 1;10(5):433-43

Mice deficient in methylenetetrahydrofolate reductase exhibit
hyperhomocysteinemia and decreased methylation capacity, with
neuropathology and aortic lipid deposition.

Chen Z, Karaplis AC, Ackerman SL, Pogribny IP, Melnyk S, Lussier-Cacan S, Chen
MF, Pai A, John SW, Smith RS, Bottiglieri T, Bagley P, Selhub J, Rudnicki MA, James
SJ, Rozen R.

Departments of Biology, Human Genetics and Pediatrics, Department of Medicine, Department
of Pathology, McGill University, Montreal, Quebec H3A 1B1, Canada.

Hyperhomocysteinemia, a risk factor for cardiovascular disease, is caused by nutritional and/or
genetic disruptions in homocysteine metabolism. The most common genetic cause of
hyperhomocysteinemia is the 677C-->T mutation in the methylenetetrahydrofolate reductase
(MTHFR) gene. This variant, with mild enzymatic deficiency, is associated with an increased risk
for neural tube defects and pregnancy complications and with a decreased risk for colon cancer
and leukemia. Although many studies have reported that this variant is also a risk factor for
vascular disease, this area of investigation is still controversial. Severe MTHFR deficiency results
in homocystinuria, an inborn error of metabolism with neurological and vascular complications.
To investigate the in vivo pathogenetic mechanisms of MTHFR deficiency, we generated mice
with a knockout of MTHFR: Plasma total homocysteine levels in heterozygous and homozygous
knockout mice are 1.6- and 10-fold higher than those in wild-type littermates, respectively. Both
heterozygous and homozygous knockouts have either significantly decreased
S-adenosylmethionine levels or significantly increased S-adenosylhomocysteine levels, or both,
with global DNA hypomethylation. The heterozygous knockout mice appear normal, whereas the
homozygotes are smaller and show developmental retardation with cerebellar pathology.
Abnormal lipid deposition in the proximal portion of the aorta was observed in older
heterozygotes and homozygotes, alluding to an atherogenic effect of hyperhomocysteinemia in
these mice.