Silicon Investor (SI) -- The First Internet Community

STOCKTALK

We've detected that you're using an ad content blocking browser plug-in or feature. Ads provide a critical source of revenue to the continued operation of Silicon Investor. We ask that you disable ad blocking while on Silicon Investor in the best interests of our community. If you are not using an ad blocker but are still receiving this message, make sure your browser's tracking protection is set to the 'standard' level.

Biotech / Medical : AFFYMETRIX (AFFX) -- Ignore unavailable to you. Want to Upgrade?

To: Boyce Burge who wrote (619)	2/3/1998 8:22:00 PM
From: scaram(o)uche	Read Replies (1) \| Respond to of 1728

>>Caveat...I havent read any patents, just press releases, so there are doubtless other issues as well<< You asked for it. :-) Posted for discussion only and from a totally ignorant and thus neutral stance (not a shareholder of either company at this time), the abstract and claim 1 from the first patent, priority date 4/12/93 or earlier..... 5492806 : Method of determining an ordered sequence of subfragments of a nucleic acid fragment by hybridization of oligonucleotide probes INVENTORS: Drmanac; Radoje T., Beograd, Yugoslavia Crkvenjakov; Radomir B., Beograd, Yugoslavia ASSIGNEES: Hyseq, Inc., Sunnyvale, CA ISSUED: Feb. 20, 1996 FILED: Apr. 12, 1993 SERIAL NUMBER: 045912 MAINT. STATUS: CC INTL. CLASS (Ed. 6): C12Q 001/70; C12Q 001/68; U.S. CLASS: 435/005; 435/006; 935/077; 935/078; FIELD OF SEARCH: 435-5;6 ; ABSTRACT: The sequence of a given nucleic acid fragment is read by the hybridization and assembly of positively hybridizing exactly complementary oligonucleotide probes through overlapping subfragments. By simultaneous hybridization of nucleic acid subfragments bound onto a filter, representing single-stranded phage vector with a cloned insert, with about 50,000 to 100,000 groups of probes, the main type of which is (A,T,C,G)(A,T,C,G)N8(A,T,C,G), information for computer determination of a sequence of DNA having the complexity of a mammalian genome are obtained in one step. To obtain a maximally completed sequence, three libraries cloned into the phage vector, M13, are used. The process can be easily and entirely robotized for factory reading of complex genomic fragments or DNA molecules. CLAIM: We claim: 1. A method for determining an ordered sequence of one or more subfragments of a nucleic acid fragment by ordering oligonucleotide probe sequences which are complementary to subfragments of said nucleic acid fragment, comprising the steps of: (a) contacting said nucleic acid fragment with a set of oligonucleotide probes, each having a unique internal portion selected from the group consisting of 5-mers, 6-mers, 7-mers, and 8-mers, which may be in tandem, under conditions which distinguish a subset of oligonucleotide probes which are exactly complementary to one or more subfragments of said nucleic acid fragment from oligonucleotide probes which are not exactly complementary to one or more subfragments of said nucleic acid fragment; (b) detecting the subset of oligonucleotide probes which are exactly complementary to one or more subfragments of said nucleic acid fragment; and (c) ordering said subset of oligonucleotide probes by compiling overlapping sequences of said subset of oligonucleotide probes which are exactly complementary to one or more subfragments of said nucleic acid fragment, thereby determining the ordered sequence of one or more subfragments of a nucleic acid fragment.